###############################################
# Meta-analysis 14: Group Identification
###############################################

# 0) User paths
PATH <- "" 

path_meta_groupid        <- file.path(PATH, "Datasets", "meta.groupid.csv")
path_meta_groupid_biv    <- file.path(PATH, "Datasets", "meta.groupid_biv.csv")
path_meta_groupid_random <- file.path(PATH, "Datasets", "meta.groupid_random.csv")
path_out_csv             <- file.path(PATH, "Results",  "14.results_groupid_models.csv")

# 1) Settings
outcome_name <- "Group identification"

# 2) Packages
suppressPackageStartupMessages({ library(metafor) })

# 3) Load data
meta.groupid        <- read.csv(path_meta_groupid,        stringsAsFactors = FALSE)
meta.groupid_biv    <- read.csv(path_meta_groupid_biv,    stringsAsFactors = FALSE)
meta.groupid_random <- read.csv(path_meta_groupid_random, stringsAsFactors = FALSE)

# 4) Basic checks
required_cols <- c("authoryear", "yi", "vi")
stopifnot(all(required_cols %in% names(meta.groupid)))
stopifnot(all(required_cols %in% names(meta.groupid_biv)))
stopifnot(all(required_cols %in% names(meta.groupid_random)))

# 5) Full, all 3-level RE
full_all_fit <- rma.mv(yi, vi,
                       random = ~ 1 | authoryear/row.names(meta.groupid),
                       data   = meta.groupid, test = "t")
full_all_df <- data.frame(
  coef        = unname(full_all_fit$beta),
  ci.lb95     = full_all_fit$ci.lb,
  ci.ub95     = full_all_fit$ci.ub,
  pval        = full_all_fit$pval,
  outcome     = outcome_name,
  n           = length(unique(meta.groupid$authoryear)),
  k           = nrow(meta.groupid),
  sample_type = "All",
  model_type  = "Full"
)

# 6) Bivariate, all 3-level RE
biv_all_fit <- rma.mv(yi, vi,
                      random = ~ 1 | authoryear/row.names(meta.groupid_biv),
                      data   = meta.groupid_biv, test = "t")
biv_all_df <- data.frame(
  coef        = unname(biv_all_fit$beta),
  ci.lb95     = biv_all_fit$ci.lb,
  ci.ub95     = biv_all_fit$ci.ub,
  pval        = biv_all_fit$pval,
  outcome     = outcome_name,
  n           = length(unique(meta.groupid_biv$authoryear)),
  k           = nrow(meta.groupid_biv),
  sample_type = "All",
  model_type  = "Bivariate"
)

# 7) Full, quasi-experimental 3-level RE
full_random_fit <- rma.mv(yi, vi,
                          random = ~ 1 | authoryear/row.names(meta.groupid_random),
                          data   = meta.groupid_random, test = "t")
full_random_df <- data.frame(
  coef        = unname(full_random_fit$beta),
  ci.lb95     = full_random_fit$ci.lb,
  ci.ub95     = full_random_fit$ci.ub,
  pval        = full_random_fit$pval,
  outcome     = outcome_name,
  n           = length(unique(meta.groupid_random$authoryear)),
  k           = nrow(meta.groupid_random),
  sample_type = "Quasi-experimental",
  model_type  = "Full"
)

# 8) Combine and save
out_models <- rbind(full_all_df, biv_all_df, full_random_df)
print(out_models, row.names = FALSE)
if (!is.null(path_out_csv)) write.csv(out_models, path_out_csv, row.names = FALSE)
